BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012E01LP1|AL426369
(789 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig838 1497 0.0
>3x_Contig838
Length = 3732
Score = 1497 bits (749), Expect = 0.0
Identities = 771/784 (98%), Gaps = 1/784 (0%)
Strand = Plus / Minus
Query: 7 ccgaatgtatgca-cttttkgaaaaagccggtatctatttgattctagatttgaacactc 65
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3634 ccgaatgtatgcaacttttggaaaaagccggtatctatttgattctagatttgaacactc 3575
Query: 66 ctggtgcttcaawcwctagaatcagtcctcaatgttcgtacaacgctgattatttgcmaa 125
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3574 ctggtgcttcaatctctagaatcagtcctcaatgttcgtacaacgctgattatttgcaaa 3515
Query: 126 gtgtgtttgccacagtggacgagtttgtctcgtacaataacactttggggttcttagctg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3514 gtgtgtttgccacagtggacgagtttgtctcgtacaataacactttggggttctttgctg 3455
Query: 186 gtaacgaagttatcaacagtgaaaataccacgaatactgccgtttacgtcaaggccactg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3454 gtaacgaagttatcaacagtgaaaataccacgaatactgccgtttacgtcaaggccactg 3395
Query: 246 ttagagatattaagamatacatgamggctagaaattatagagctgttccagttggttact 305
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3394 ttagagatattaagaaatacatgaaggctagaaattatagagctgttccagttggttact 3335
Query: 306 ctgctgctgatgtgtcatccaaccgtcaattggctgcggaatatttcaactgtggggatg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3334 ctgctgctgatgtgtcatccaaccgtcaattggctgcggaatatttcaactgtggggatg 3275
Query: 366 atgccgatgcaagamtcgatatgttcggtgttaacgattactcgtggtgcggttcgtctt 425
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3274 atgccgatgcaagaatcgatatgttcggtgttaacgattactcgtggtgcggttcgtctt 3215
Query: 426 ctttccaagtctccggttatgccaacmagatggaactttacaagamctattcgatcccaa 485
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 3214 ctttccaagtctccggttatgccaacaagatggaactttacaagaactattcgatcccaa 3155
Query: 486 tcttcttgagtgaatacgnttgthacgaggtcgtctcttcaagaccattcactgaagtcg 545
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3154 tcttcttgagtgaatacggttgtaacgaggtcgtctcttcaagaccattcactgaagtcg 3095
Query: 546 gtgccatttactctaccaaaatgtcctctgtgttctccggaggattggtctacgaatact 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3094 gtgccatttactctaccaaaatgtcctctgtgttctccggaggattggtctacgaatact 3035
Query: 606 ctcaagagagtaacaagtacgggttagttcaaatagatggtgactctgttaccactttgg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3034 ctcaagagagtaacaagtacgggttagttcaaatagatggtgactctgttaccactttgg 2975
Query: 666 atgatttcgataacttgaaggccgaattcgaaaaggtgcaaaacccagcaggtgacggtg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974 atgatttcgataacttgaaggccgaattcgaaaaggtgcaaaacccagcaggtgacggtg 2915
Query: 726 gatactacgccgataacgattactccgaatgtccttcatacgaggcaggtgtttgggaat 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2914 gatactacgccgataacgattactccgaatgtccttcatacgaggcaggtgtttgggaat 2855
Query: 786 caaa 789
||||
Sbjct: 2854 caaa 2851
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4000
Number of Sequences: 1807
Number of extensions: 4000
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 789
length of database: 10,358,551
effective HSP length: 16
effective length of query: 773
effective length of database: 10,329,639
effective search space: 7984810947
effective search space used: 7984810947
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.4 bits)